PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 232aa    MW: 25169 Da    PI: 8.5033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777800genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.4e-0589111123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+ksFs+   L  H  +H
  676777800  89 YKCSVCDKSFSSYQALGGHKASH 111
                9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.68E-889111No hitNo description
SMARTSM003550.003489111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.28489116IPR007087Zinc finger, C2H2
PfamPF139121.0E-1389113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-8140167No hitNo description
SMARTSM003550.17145167IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099145172IPR007087Zinc finger, C2H2
PfamPF139128.1E-13145169IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MALEAISSPR LASPIPPLFE DSSRFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLL  60
LLARDGNHRS NRQPLPLPLA PVAEKSLSYK CSVCDKSFSS YQALGGHKAS HRKNLSQTLS  120
CGGDDQSTAT TTTTSAVTVG SGKSHVCTIC HKSFPSGQAL GGHKRCHYEG NNNSSSVSNS  180
EGAGSTSHVS SSHRGFDLNI PPVPEFSLVN GDDEVMSPMP AKKPRFDFSE KL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113736.11e-133PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-135ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLM4EVL21e-133M4EVL2_BRARP; Uncharacterized protein
STRINGBra032845.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-119salt tolerance zinc finger